Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015938662.1_cds_XP_016483447.1_74560
CDS Infomation

[gene=LOC107804133] [db_xref=GeneID:107804133] [protein=protein PAT1 homolog 1-like] [partial=3'] [protein_id=XP_016483447.1] [location=complement(join(<7..2042,2681..2744,3766..3822,6474..6619,7231..7258))] [gbkey=CDS]
Sequence

ATGGAATTTGATGACAACCGCCCTGCAGGAGAGGAAGTATTTGATGCATCACAATATGCA
TTCTTTGGTAATGATGTAGTCGAAGAAGTTGAACTGGGTGGGTTGGAAGATGAAGAGGAT
GGTCTTCCTCCGGTTGGGTTTGATGATGAAGAGTATCAATTAGGCCAAGAAGAGGTTGAA
GCTATTGGATCTTTGTCAGAGATTGATGACCTTAGTAGCAAATTTTCCAAGTTGAACAAG
GATGATGGTGGCGCCATAAATCCAGGATTTATTGGTGACAGGGAATACAGAGAGAGCTCA
TCTGCTGTTGAGTGGGCACAAGATGCAGATTTTCATAATTGGATTGGTCGGAAAGCTCTT
GATGGTGAAAGCAATGACAGCAAAAGATGGCCATCGCAGCCGTACTCTTCTGCTGCTCGC
TTTTTGGAACCAAATCCTTTGTACAGAACTTCCTCATACCCTGAGCAACAACAGCAACAT
GAATATCAACAGCAAACCCCAAACCACCACTACTCCAGTGAACCAATACTCATCCCAAAA
TTACCTTTCACTTCATTTCCTCCTCCTAGTGTGAGGCATCCACAAGCTTCCCCAAATAAC
CAGTCACAGCATCCGAATGGTCCAAATCAACCTGGTGGACAGCAAATGCCGCTTTCCTCT
CCTAACTTACCTCCCTTTTTAAACCCTGCAAATCACTCAACTGCCTCACATCATGGCCCG
CAGTATGGTGGAAAGTTTGCTCAAGGAACACCTCCTGGGCTTGCCCTTCATACTCAAATT
CCAAGCCAATGGTTGAAGCAATCTACTTTGTATCCTGGAGAGCAATCAAGCCTGACCAGT
AATATGATCCCGCAGCAGTTGCATCGCCAAAATGGTTTCGCACCACCACATGGGGGCCCG
CAGCAACCCCAGCAGCCTGGACAACACCATCCCTTGCATTCACCCTATGGTCATATGCCG
GGGTTGCAATCCCAACTGTTTAATCACCATATGTCTCCACCCTCGCAGGTGCTGAATAAT
TTTGATATGCTTGGGTTGGCTGATTTAAGAGATCAAAAGGCAAAACTAATGCTGAGAGGT
AGACAGGGCCTGCACTACTCCCAACAAGGCTTTGACGTTGGTAGCCAGAGAAATAATAGT
GCATGGCCAAGATTTAAATCCAAGTACATGACAGCAGATGAATTAGAGAATATTCTTAGA
ACGCAGCTGGCTGCTACCCATAGCAACGATCCTTATGTTGATGATTATTATCACCAAGCT
TGTCTGGCAAAGAAGTCCGCTGGTGCAAAGTTGAAGCACCATTTCTGCCCAAATAATTTG
AGGGATGGTAGTGCTCGAACTCACGCTAATTCTGAGCCACATCCTTTTCTCCAGGTTGAT
GCTCTTGGAAGGGTTGCTTTCTCTTCTATTCGCAGGCCCCGCCCGCTTCTTGAAGTTGAT
CCGCCAAAATCATCACCTACTGGATGCATTGAACAGAAAATATCTGAGAAACCCCTGGAG
CAAGAGCCAATGCTAGCAGCTAGGGTGACTATTGAGGATGGTCTCTGTCTTCTTCTTGAT
GTTGATGATATTGACCGGTTCCTACAATTTAATCAACTTCCAGATGGAGGAGACCAGTTG
AAACGCAGGCGGCAGGTTCTGCTTGAGGGTTTGGCATCATCACTTCAATTAGTTGACCCC
CTAGGAAAAAATGGCCACTCTGTGAATTTGGCTGCTAAAGATGATGTTGTCTTCTTGAGG
ATCGTCTCCCTTCCCAAGGGCCGGAAGCTGCTAGTTCGATACCTGCAGCTTCTTTTCCCT
GGAAGTGAACTGACCAGGATGGTTTGCATGGCTATTTTCCGGCATCTAAGGTTCTTGTTT
GGCGGGCTTCCGAGTGACCCTGGGGCAACTGAGACTACTGTGAGCCTTGGAAGGACTGTG
TCACTGTGTATTTGTGAGATGGAGCTCAAAGCACTTGCTGCCTGTCTTGCATCAGTGGTT
TGTTCAGCAGAGCCTCCTCCGCTCCGTCCTGTTGGAAGCCCTGCTGGAGATGGGGCATCT
ATTGTTCTAAAATCTCTTCTTGAGAGGGCAACTGAGATCTTAAGAGATCCCCATGCTGCT
GCCCAGTGCAGCATACCTAATAGGTCATTCTGGCAGGCCTCGTTTGATGCATTTTTTGGG
TTACTCACGAAATACTGTTTCAACAAATACGACACCGTAATGCAATGTTTCTTCACACAA
GCCCCACCAGGTGTGGCTGTTAGTGGATCTGATGCAGCCAAAGCCATTAGTAGGGAGATG
CCTGTTGAACTTTTGCGTGCGAGTCTTCCTCACACTAGTGAACAACAGAAA

Peptide Sequence

PEP ID

XP_016483447.1
PEP Infomation

PREDICTED: protein PAT1 homolog 1-like, partial [Nicotiana tabacum]
Sequence

MEFDDNRPAGEEVFDASQYAFFGNDVVEEVELGGLEDEEDGLPPVGFDDEEYQLGQEEVE
AIGSLSEIDDLSSKFSKLNKDDGGAINPGFIGDREYRESSSAVEWAQDADFHNWIGRKAL
DGESNDSKRWPSQPYSSAARFLEPNPLYRTSSYPEQQQQHEYQQQTPNHHYSSEPILIPK
LPFTSFPPPSVRHPQASPNNQSQHPNGPNQPGGQQMPLSSPNLPPFLNPANHSTASHHGP
QYGGKFAQGTPPGLALHTQIPSQWLKQSTLYPGEQSSLTSNMIPQQLHRQNGFAPPHGGP
QQPQQPGQHHPLHSPYGHMPGLQSQLFNHHMSPPSQVLNNFDMLGLADLRDQKAKLMLRG
RQGLHYSQQGFDVGSQRNNSAWPRFKSKYMTADELENILRTQLAATHSNDPYVDDYYHQA
CLAKKSAGAKLKHHFCPNNLRDGSARTHANSEPHPFLQVDALGRVAFSSIRRPRPLLEVD
PPKSSPTGCIEQKISEKPLEQEPMLAARVTIEDGLCLLLDVDDIDRFLQFNQLPDGGDQL
KRRRQVLLEGLASSLQLVDPLGKNGHSVNLAAKDDVVFLRIVSLPKGRKLLVRYLQLLFP
GSELTRMVCMAIFRHLRFLFGGLPSDPGATETTVSLGRTVSLCICEMELKALAACLASVV
CSAEPPPLRPVGSPAGDGASIVLKSLLERATEILRDPHAAAQCSIPNRSFWQASFDAFFG
LLTKYCFNKYDTVMQCFFTQAPPGVAVSGSDAAKAISREMPVELLRASLPHTSEQQK

Transcript Sequence

Gene sequence data has not been registered.